Managing R Objects, Workspace, and .RData Files

The post is about an introduction to workspace, R objects, and .Rdata file in R language. When working in R, everything you create – variables, data frames, functions – exists in your workspace (also called the global environment). Understanding how to manage these objects and save your work properly is crucial for:

✔ Reproducible analysis
✔ Efficient memory management
✔ Sharing work with collaborators
✔ Recovering from crashes

Here, we will Learn how to efficiently manage R objects, control your workspace, and master .RData files for better workflow organization and reproducibility in R programming.

R Language as Functional Language

The R program’s structure is similar to the programs written in other computer languages such as C or its successors C++ and Java. However, important differences between these languages and R are (i) R has no header files, (ii) most of the declarations are implicit, (iii) there are no pointers in R, and (iv) text and strings as vectors can be defined and manipulated directly.

R is a functional language. Most of the computation in R is handled using functions. The R language environment is designed to facilitate the development of new scientific computation tools.

R Objects

All data in R exists as objects with specific types and classes. Everything (such as functions and data structure) in R is an object. To see the names of all R objects in the workspace, on the R command prompt, just type,

ls()

objects() is an alternative to ls() function. Similarly, typing the name of any object on the R prompt displays (prints) the content of that object. As an example type q, mean, and lm, etc. on the R prompt.

# Numeric
x <- 3.14

# Character
name <- "Data Analysis"

# Logical
is_valid <- TRUE

# Vector
ages <- c(23, 45, 32)

# Data Frame
df <- data.frame(id=1:3, name=c("A","B","C"))

# Function
my_func <- function(x) x^2

One can check the class and structure of R Objects using class() and str() functions.

class(x)    # Check object class
str(df)     # View structure of df object
ls()        # List all objects

R Workspace

It is possible to save individual objects or collections of objects into a named image file. The named image file has an extension of .RData. Some possibilities to save an object from R workspace are:

To save the content of R workspace into a file .RData, type

save.image()

To save objects in the file archive.RData, type

save.image(file = "archive.RData")

To save some required objects in data.RData, type

save(x, y, file = "data.RData")

These image files can be attached to make objects available in the next R session. For example.

attached ("arvhive.RData")
R workspace, R Objects

Note that when quitting, R offers the option of saving the workspace image. By default, the workspace is saved in an image file (.RData) in the working directory. The image file can be used in the next R session. Saving the workspace image will save everything from the current workspace. Therefore, use the rm() function to remove objects that are not required in the next R session.

Managing the R Workspace

The R workspace contains all active objects. The essential workspace Commands are:

ls()          # List all objects
rm(x)         # Remove object x
rm(list=ls()) # Clear entire workspace

# Remove multiple objects
rm(list=c("df", "ages"))

# Check memory usage
object.size(df)

Best Practices about R Objects

✔ Regularly clean unused objects
✔ Use meaningful object names
✔ Group related objects in lists

Summary of R Objects, Workspace, and .RData Files

Mastering workspace management in R leads to:

  • More reproducible analyses
  • Better memory efficiency
  • Easier collaboration
  • Reduced risk of data loss

Pro Tip: Combine with version control (Git) for maximum reproducibility.

For further details about saving and loading R workspace, visit: Save and Load R Workspace

Learn Statistics and Data Analysis

Objects in R Language

The post is about objects in R Language. In R, everything is an object. The commands run in a session can be saved or loaded in a file as history. R is an object-oriented programming language where everything you work with is an object. Understanding the R’s Objects system is fundamental to effective data analysis and programming. This guide covers all essential object types with practical examples.

Loading Saved Work

Question 1: How can I retrieve (load) the saved work using the history function in R?
Answer: The loadhistory() function will load an “.Rhistory” file.

loadhistory("d:/file_name.Rhistory")

This function will load the file named “file_name.Rhistory” from the D: drive.

The other way may be to access the “.Rhistory” file through the file menu. For this click File and then Load History. From the dialog box, browse the folder where you saved the “.Rhistory” file and click Open to start working.

Script File in R

Question 2: How do I use a script of commands and functions saved in a text file?
Answer: The script of commands and functions saved in a text file (also called a script file) can be used to write the following command.

source("d:/file_name.txt")

The “file_name.txt” will load from D: drive.

Question 3: How do I get R to echo back the R commands and functions in a script file that I am sourcing into R? That is, the functions that I have written, I want to see these functions are being executed.
Answer: use echo=TRUE argument by using source() function

source("d:/file_name.txt", echo = T)

Question 4: How do I close the help file when working on a Macintosh operating system?
Answer: Typing just q will close the help file and bring you back to the R console.

Objects in R Language: Currently Available Objects

Question 5: How can I see a list of currently available objects in R?
Answer: Use the objects() or ls() functions to see the list of objects currently available

objects()
ls()
Objects in R Language

Remove Objects and Functions

Question 6: How do I remove/delete unwanted objects and functions?
Answer: The rm() function can be used to delete or remove the objects that are not required. The commands below will delete objects named object_name1 & object_name2 and functions named function_name1 & function_name2.

rm(object_name1, object_names2)
rm(function_name1, function_name2)

Object Inspection and Manipulation

One can check Objects’ Properties in R Language. The following are useful functions for the inspection and manipulation of objects in R:

class(obj)    # Object class
typeof(obj)   # Storage type
str(obj)      # Structure
attributes(obj) # All attributes
names(obj)    # Names of elements
dim(obj)      # Dimensions
length(obj)   # Length/size

Best Practices for Working with Objects in R Language

The following are best practices for working with R’s objects.

  1. Always check object structure with str() after creation
  2. Use appropriate object types for different data (factors for categories)
  3. Be mindful of memory with large objects
  4. Name objects descriptively (avoid single letters)
  5. Document object structures in complex projects

Conclusion

R’s object system provides powerful and flexible ways to organize and manipulate data. Understanding these object types is crucial for:

  • Implementing object-oriented programming patterns
  • Efficient data analysis
  • Writing reusable code
  • Developing packages

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Getting Help with R

Getting help with R is important to learning the language and getting expertise in R.

Question: How one can get help with different commands in the R Language?
Answer: There are many ways to get help with the different commands (functions). There is a built-in help facility which is similar to the man facility in Unix. For beginners to get help, the help() function or the symbol ? (question mark only) can be used to get help with different commands.

Help Function in R

Questions: Provide some examples of getting help with different functions used in R.
Answer: To get more information on any specific command (function), for example for getting help with solve( ), lm( ), plot( ), etc., write the following commands at the prompt:

help(solve)
help(lm)
help(plot)

Question: Can one get help for special symbols, and characters in R Language?
Answer: Yes one can get help for special characters. For example;

help("[[")
help("[")
help("^")
help("$")
help("%%")

Question: What help.start() does?
Answer: The help.start( ) will launch a web browser that allows the help pages to be browsed with hyperlinks. It can be a better way to get help with different functions.

help.search Function

Question: There is help.search( ) command. For what purpose it is?
Answer: The help.search() command allows searching for help in various ways. To get what help.search( ) functions do, write this command at the prompt;

help(help.search)

Question: Provide some details about help.search( ) function and also illustrate it by providing some examples.
Answer: The help.search( ) allows for searching the help system for documentation matching a given character string in the (file) name, alias, title, concept, or keyword entries (or any combination thereof), using either fuzzy matching or regular expression matching. Names and titles of the matched help entries are displayed nicely formatted. The examples are:

help.search("linear")
help.search("linear models")
help.search("print")
help.search("cat")
Getting Help with R Language help.search("linear")

? Operator

Question: How ? can be used to get help with different functions and objects in R language?
Answer: The ? mark can be used to get help with the Windows version of the R Language. For example;

?print
?help
?"[["
?methods
?lm
Getting Help in R: Frequently Asked Questions About R

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